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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17491977_17493038_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17491977 - 17493038
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGACGA
5'SS Class:
major
3'SS Sequence:
TTGTTGGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAACCCTGATAC
Flanking Amino Acid:
EPVSFYVQPKSANYGNFLHL
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
64.7
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
33.8
-1.9
3.2
44
43.5
Minor BPS
45.2
-0.3
1.7
51.54
38

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548