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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17494392_17495909_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17494392 - 17495909
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTCG
5'SS Class:
major
3'SS Sequence:
AAATATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACAT
Flanking Amino Acid:
NFVFARTMPSEGADNIPGTV
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.8
43.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.5
0.53
1
65.7
44.1
Minor 5ss
42.4
-0.8
3.1
56.7
47.5
Minor BPS
49.9
0.07
1.9
72.8
44.1

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548