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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17496197_17499592_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17496197 - 17499592
Intron Length:
3396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATATGT
Flanking Amino Acid:
NFLHNSIFVPRPDRKRRDVF
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75.8
0.58
0.9
69
37.2
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
52.2
0.15
2.1
80.49
41.6

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548