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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17500162_17500587_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17500162 - 17500587
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
EIVYIRTNAAVPSIPLDVIS
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
75
0.62
1.1
77.2
36
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548