About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17500827_17501898_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17500827 - 17501898
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TTGAATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
LISFTVYYKEAPFKNVTEYD
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
65
42.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.6
0.55
1
70.7
43.9
Minor 5ss
30.6
-2.2
2.6
28.8
36.1
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548