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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17504119_17509603_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17504119 - 17509603
Intron Length:
5485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AACTTCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTCCTTCAAA
Flanking Amino Acid:
RYILGEEQVDGNYSFYVLDN
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
72.1
0.5
0.9
63
38.6
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
71.3
0.66
1.8
84.76
35

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548