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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17511688_17514113_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17511688 - 17514113
Intron Length:
2426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTTCCTAACA
Flanking Amino Acid:
PSGFIRNGSQSMFCSPCEGP
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
62.4
43.6
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.5
0.71
0.8
77.5
29.8
Minor 5ss
30.2
-2.3
3.2
38.2
46.7
Minor BPS
69.7
0.61
1.6
79.54
36.7

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548