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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_175525_176211_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
175525 - 176211
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAAAG
5'SS Class:
major
3'SS Sequence:
TGTCTGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTCCTTGATA
Flanking Amino Acid:
SWRNISKYMPRGLVCNVLLT
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
65.4
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.3
0.59
0.9
73.8
36.9
Minor 5ss
35.3
-1.7
2.7
40.2
45.6
Minor BPS
76.9
0.84
1
77.57
32.4

Associated Gene:

Gene:
DMXL2
Ensembl Gene ID:
ENSAPLG00000008330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038574
136000 - 191755
55756
ENSAPLT00000008801
136000 - 191755
55756