About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1759189_1759868_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1759189 - 1759868
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTTCTTGATT
Flanking Amino Acid:
KTNAIVHLQLVPGSSSKWEE
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.6
0.73
0.9
76.5
37.2
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
78.5
0.98
1
88.64
29.2

Associated Gene:

Gene:
SLC30A4
Ensembl Gene ID:
ENSAPLG00000004133
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004246
1757775 - 1779605
21831