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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1760004_1761290_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1760004 - 1761290
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACTGAATTAATT
Flanking Amino Acid:
LRDTGVIILEGVPRHLNVDR
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.8
0.58
0.9
69.3
40.6
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
49.7
0.06
1.9
68.34
42.6

Associated Gene:

Gene:
SLC30A4
Ensembl Gene ID:
ENSAPLG00000004133
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004246
1757775 - 1779605
21831