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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1761913_1762158_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1761913 - 1762158
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGACCT
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGAAT
U12 Branch Point Sequence:
GTTTCTTGGAAT
Flanking Amino Acid:
TAAVGVAVNLIMGFLLNQSG
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.1
38.8
Major BPS
59.5
0.24
1.5
69.7
44.2
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
37
-1.5
3.3
54.6
42.2
Minor BPS
59.2
0.37
1.6
77.88
38.1

Associated Gene:

Gene:
SLC30A4
Ensembl Gene ID:
ENSAPLG00000004133
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004246
1757775 - 1779605
21831