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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1767912_1779399_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1767912 - 1779399
Intron Length:
11488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TATGTCTTGACT
Flanking Amino Acid:
TYTGRNKGEWGGYVANSLAI
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
71.7
0.77
1.3
83.44
37.7

Associated Gene:

Gene:
SLC30A4
Ensembl Gene ID:
ENSAPLG00000004133
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004246
1757775 - 1779605
21831