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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17685674_17692682_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17685674 - 17692682
Intron Length:
7009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCCCAATACTT
Flanking Amino Acid:
AGLILEIETYRALLEGESNQ
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.6
0.67
0.9
73.4
41.3
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
45.3
-0.2
2.1
67.5
43.2

Associated Gene:

Gene:
SYNM
Ensembl Gene ID:
ENSAPLG00000008430
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008769
17678698 - 17700448
21751