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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17692757_17694297_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17692757 - 17694297
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATG
Flanking Amino Acid:
REQLAGQLPQDIINTSYNYT
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.6
0.8
0.8
80.4
30.8
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
64.8
0.33
1.3
65.7
36.6

Associated Gene:

Gene:
SYNM
Ensembl Gene ID:
ENSAPLG00000008430
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008769
17678698 - 17700448
21751