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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17721300_17723641_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17721300 - 17723641
Intron Length:
2342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
ACCTTGATACTG
Flanking Amino Acid:
RGPEVVPAARRNGPVFRRCS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
76.7
0.6
0.8
69.5
36.8
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
36.3
-1.1
2.2
37.01
40.1

Associated Gene:

Gene:
LRRC28
Ensembl Gene ID:
ENSAPLG00000008018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043851
17721118 - 17770311
49194