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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17722001_17723641_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17722001 - 17723641
Intron Length:
1641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCTT
5'SS Class:
major
3'SS Sequence:
TCTTGTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
ACCTTGATACTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
66.2
44.9
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
76.7
0.6
0.8
69.5
36.8
Minor 5ss
35.4
-1.7
3.8
55.9
48.3
Minor BPS
36.3
-1.1
2.2
37.01
40.1

Associated Gene:

Gene:
LRRC28
Ensembl Gene ID:
ENSAPLG00000008018
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008335
17721853 - 17770311
48459