Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17764025_17766537_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17764025 - 17766537

Intron Length:

2513

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGGTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTATTCCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTTGTTTCTATT

Flanking Amino Acid:

LYNTYYVYLKDLNFLTPISL

Intron Amino Acid Position:

291

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

78.6

35.4

Major BPS

73.8

0.59

1.3

72.8

Major PPT

76.3

0.59

0.8

69.7

36.4

Minor 5ss

41.2

-1

3.7

63.6

48.1

Minor BPS

47.6

-0.1

1.9

70.82

40.9

Associated Gene:

Gene:

LRRC28

Ensembl Gene ID:

ENSAPLG00000008018

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043851

17721118 - 17770311

49194

ENSAPLT00000008335

17721853 - 17770311

48459