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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1779474_1779573_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1779474 - 1779573
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCATCTATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTCAGTTAACT
Flanking Amino Acid:
MFGAAFKNLLTQIFYYSFIW
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.1
0.57
0.9
69.7
35.2
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
54.4
0.22
2.3
78.43
43.5

Associated Gene:

Gene:
SLC30A4
Ensembl Gene ID:
ENSAPLG00000004133
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004246
1757775 - 1779605
21831