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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1779574_1780799_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1779574 - 1780799
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
TTTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GCTGCTTTACTC
Flanking Amino Acid:
QRSKSALHELTQNQVVLLET
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
68.8
43.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89.5
0.89
0.7
88.2
29.1
Minor 5ss
40.1
-1.1
2.8
48
41.4
Minor BPS
50
-0
1.7
57.91
42

Associated Gene:

Gene:
BLOC1S6
Ensembl Gene ID:
ENSAPLG00000004081
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004183
1778138 - 1782714
4577