About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1781580_1781875_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1781580 - 1781875
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
ATTTTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AAACTTTTATTT
Flanking Amino Acid:
MLHEKTSKLKKRALKLQQKR
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.9
0.65
0.9
78.2
35.7
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
49
0
1.5
61.33
36.5

Associated Gene:

Gene:
BLOC1S6
Ensembl Gene ID:
ENSAPLG00000004081
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004183
1778138 - 1782714
4577