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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17823615_17856158_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17823615 - 17856158
Intron Length:
32544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020089
17823545 - 17904295
80751