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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17856358_17861908_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17856358 - 17861908
Intron Length:
5551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAATTATTATTC
Flanking Amino Acid:
TRIMDERNRQVTFTKRKFGL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.1
0.77
0.7
77.5
31.3
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
49.3
-0
1.8
61.28
37.9

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027523
17856159 - 17904295
48137
ENSAPLT00000020089
17823545 - 17904295
80751
ENSAPLT00000017947
17856304 - 17904295
47992
ENSAPLT00000040905
17816713 - 17904295
87583
ENSAPLT00000007674
17856159 - 17904295
48137
ENSAPLT00000035454
17856304 - 17904295
47992