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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17862113_17878144_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17862113 - 17878144
Intron Length:
16032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
AATTGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTATGTGAATT
Flanking Amino Acid:
ESRTNSDIVETLRKKGLNGC
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.5
0.57
1
71.1
43.3
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
47.7
-0
2.1
69.95
41.1

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027523
17856159 - 17904295
48137
ENSAPLT00000020089
17823545 - 17904295
80751
ENSAPLT00000007674
17856159 - 17904295
48137
ENSAPLT00000040905
17816713 - 17904295
87583