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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17862113_17881519_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17862113 - 17881519
Intron Length:
19407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTCCTCATCT
Flanking Amino Acid:
ESRTNSDIVEPGLPAQNFSM
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
86.4
0.82
0.7
84.6
23.3
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
66.2
0.59
1.8
85.48
40.5

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017947
17856304 - 17904295
47992