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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17878277_17881519_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17878277 - 17881519
Intron Length:
3243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TCCTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTCCTCATCT
Flanking Amino Acid:
DSDFIFKRGPPGLPAQNFSM
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
86.4
0.82
0.7
84.6
23.3
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
66.2
0.59
1.8
85.48
40.5

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007674
17856159 - 17904295
48137