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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17878480_17881519_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17878480 - 17881519
Intron Length:
3040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCCTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTCCTCATCT
Flanking Amino Acid:
DNMMRNHKIAPGLPAQNFSM
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
86.4
0.82
0.7
84.6
23.3
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
66.2
0.59
1.8
85.48
40.5

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040905
17816713 - 17904295
87583
ENSAPLT00000035454
17856304 - 17904295
47992
ENSAPLT00000027523
17856159 - 17904295
48137
ENSAPLT00000020089
17823545 - 17904295
80751