Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17881740_17881867_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17881740 - 17881867

Intron Length:

128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATTT

5'SS Class:

strong_major

3'SS Sequence:

AAATTATTATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTTTTTAAAT

Flanking Amino Acid:

PQRPPSTGNAGAMLGTTDLT

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.6

33.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

62.8

0.29

61.1

43.8

Minor 5ss

42.5

-0.8

3.4

64.3

47.2

Minor BPS

73.3

0.81

1.3

84.29

36.6

Associated Gene:

Gene:

MEF2A

Ensembl Gene ID:

ENSAPLG00000007352

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027523

17856159 - 17904295

48137

ENSAPLT00000020089

17823545 - 17904295

80751

ENSAPLT00000017947

17856304 - 17904295

47992

ENSAPLT00000040905

17816713 - 17904295

87583

ENSAPLT00000007674

17856159 - 17904295

48137

ENSAPLT00000035454

17856304 - 17904295

47992