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Intron Name: Anas_platyrhynchos_platyrhynchos_11_17881928_17892086_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17881928 - 17892086

Intron Length:

10159

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGTTTAT

U12 Branch Point Sequence:

CCTAAGGTACAT

Flanking Amino Acid:

VPNGAGTSPVGNGFVNSRAS

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

76.8

31.8

Major BPS

0.47

1.2

61.1

45.5

Major PPT

86.8

0.83

0.7

84.4

23.4

Minor 5ss

33.1

-1.9

3.1

38.4

40.8

Minor BPS

30.6

-1.4

2.5

46.05

45.3

Associated Gene:

Gene:

MEF2A

Ensembl Gene ID:

ENSAPLG00000007352

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020089

17823545 - 17904295

80751

ENSAPLT00000017947

17856304 - 17904295

47992

ENSAPLT00000040905

17816713 - 17904295

87583

ENSAPLT00000007674

17856159 - 17904295

48137

ENSAPLT00000035454

17856304 - 17904295

47992

ENSAPLT00000027523

17856159 - 17904295

48137