About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17893872_17897428_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17893872 - 17897428
Intron Length:
3557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TAATCATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATC
Flanking Amino Acid:
PLSEEDELELNTQRISSSQS
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.8
0.54
0.9
71
39.4
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
75.9
0.79
1
78.34
30.9

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017947
17856304 - 17904295
47992
ENSAPLT00000040905
17816713 - 17904295
87583
ENSAPLT00000035454
17856304 - 17904295
47992
ENSAPLT00000020089
17823545 - 17904295
80751