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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17897556_17902549_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17897556 - 17902549
Intron Length:
4994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTACTT
Flanking Amino Acid:
YSAMPTAYNTDYSLTSADLS
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82.7
0.74
0.6
81.8
23
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
62
0.45
1.9
81.98
39.5

Associated Gene:

Gene:
MEF2A
Ensembl Gene ID:
ENSAPLG00000007352
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007674
17856159 - 17904295
48137
ENSAPLT00000035454
17856304 - 17904295
47992
ENSAPLT00000027523
17856159 - 17904295
48137
ENSAPLT00000020089
17823545 - 17904295
80751
ENSAPLT00000017947
17856304 - 17904295
47992
ENSAPLT00000040905
17816713 - 17904295
87583