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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1791679_1792171_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1791679 - 1792171
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TCTTCTCTAAAG
Flanking Amino Acid:
NCIRLENDVKVSYKYLIIAL
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
73
0.57
1
73.6
28.6
Major PPT
71.1
0.47
0.9
66.4
33
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
56.5
0.07
1.9
65.15
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003727
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003837
1787478 - 1798130
10653