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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1792226_1793263_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1792226 - 1793263
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCTT
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTGTCTGTAATT
Flanking Amino Acid:
ALGISLHYEKIKGLPEGFHH
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
74.8
41.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.3
0.77
0.6
84.8
22.9
Minor 5ss
39.2
-1.2
3.3
59.3
45.1
Minor BPS
57.1
0.3
2
74.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003727
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003837
1787478 - 1798130
10653