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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1793459_1794292_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1793459 - 1794292
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
GCTCACTTGATT
Flanking Amino Acid:
MYLSEAYLRKTGKRPKANIL
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
75
0.62
1
65.3
41.5
Major PPT
88.1
0.86
0.8
84.7
30.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
57.3
0.31
1.5
70.44
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003727
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003837
1787478 - 1798130
10653