About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17939508_17953456_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
17939508 - 17953456

Intron Length:
13949

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAACAGTG

5'SS Class:
major

3'SS Sequence:
TTCTCTCCTCCAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
GTCTCAG

U12 Branch Point Sequence:
CGTGTCTCAGTC

Flanking Amino Acid:
YEWKTGDWSKCSSTCGKGLQ

Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.4
0.65
1.1
69.9
41.1

Major BPS
53.2
0.08
1.7
65.3
43.7

Major PPT
85.3
0.79
0.7
77.4
31.4

Minor 5ss
39.6
-1.2
3.5
55.7
48.5

Minor BPS
44.3
-0.4
1.8
50.42
40.9

Associated Gene:

Gene:
ADAMTS17

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

17936222 - 18103291
167070

17936222 - 18103291
167070