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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17970735_17972769_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17970735 - 17972769
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTTACT
Flanking Amino Acid:
WEGCSVQCGGGERKTIVSCT
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.1
39.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.7
0.69
0.8
73.6
35.4
Minor 5ss
27.9
-2.5
3.2
39.3
46.1
Minor BPS
73.7
0.83
1.8
93.69
33.8

Associated Gene:

Gene:
ADAMTS17
Ensembl Gene ID:
ENSAPLG00000006978
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035065
17936222 - 18103291
167070
ENSAPLT00000007253
17936222 - 18103291
167070