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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1797228_1797599_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1797228 - 1797599
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATGACTTTGATG
Flanking Amino Acid:
MPFLYWNALLKGYWGGPAPI
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
80.7
0.69
0.7
73.1
31.7
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
55.8
0.04
1.4
56.77
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003727
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003837
1787478 - 1798130
10653