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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17977171_17983075_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17977171 - 17983075
Intron Length:
5905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAAAGA
5'SS Class:
major
3'SS Sequence:
TGATTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTGCTTTCATT
Flanking Amino Acid:
VEDKPAHSFLALKDSSKRSI
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65
41
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82
0.72
0.9
73.5
41.6
Minor 5ss
31.8
-2.1
3
31.7
42.4
Minor BPS
63
0.49
1.8
82.98
39.3

Associated Gene:

Gene:
ADAMTS17
Ensembl Gene ID:
ENSAPLG00000006978
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035065
17936222 - 18103291
167070