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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18006800_18019093_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18006800 - 18019093
Intron Length:
12294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGCTTTGTGATT
Flanking Amino Acid:
TNATFCKNMEHLMCAGLWCL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
80
0.75
1
78.6
31
Major PPT
80.4
0.68
0.9
74.1
40.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
47.6
-0.1
2
66.03
39.8

Associated Gene:

Gene:
ADAMTS17
Ensembl Gene ID:
ENSAPLG00000006978
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035065
17936222 - 18103291
167070
ENSAPLT00000007253
17936222 - 18103291
167070