About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18069944_18080491_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18069944 - 18080491
Intron Length:
10548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGCATTTTAACA
Flanking Amino Acid:
QRFILTVMNMVYNMFQHQSL
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73.6
0.53
1
69
40.7
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
64.8
0.46
1.3
68.05
38.5

Associated Gene:

Gene:
ADAMTS17
Ensembl Gene ID:
ENSAPLG00000006978
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035065
17936222 - 18103291
167070
ENSAPLT00000007253
17936222 - 18103291
167070