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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18080665_18092987_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18080665 - 18092987
Intron Length:
12323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGACTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AATATTTTGACT
Flanking Amino Acid:
IPDEHCKVVAEKKRQKKMKS
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
81.2
0.7
0.8
78.7
34.8
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
63
0.49
1.2
74.31
36.2

Associated Gene:

Gene:
ADAMTS17
Ensembl Gene ID:
ENSAPLG00000006978
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035065
17936222 - 18103291
167070
ENSAPLT00000007253
17936222 - 18103291
167070