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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18119958_18138826_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18119958 - 18138826
Intron Length:
18869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTTTCTCCACA
Flanking Amino Acid:
KILRRFIFLKDLKDDRSDEE
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
61.2
0.35
2
79.1
37.4

Associated Gene:

Gene:
CERS3
Ensembl Gene ID:
ENSAPLG00000006825
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007084
18119826 - 18154113
34288