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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18142290_18142541_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18142290 - 18142541
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTCTAC
U12 Branch Point Sequence:
TCTTCCTCACAG
Flanking Amino Acid:
FTLGIDNKRKDFMAHVVHHL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
90.4
25.2
Major BPS
43.5
-0.4
1.4
38.1
41.1
Major PPT
81.2
0.7
0.7
75.6
26.6
Minor 5ss
24.1
-3
4
40.6
45.6
Minor BPS
49.7
-0.1
2
60.81
46.6

Associated Gene:

Gene:
CERS3
Ensembl Gene ID:
ENSAPLG00000006825
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007084
18119826 - 18154113
34288