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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18142635_18143914_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18142635 - 18143914
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTTCTTCACT
Flanking Amino Acid:
WQTWVGYPFQTLLPSQYWYY
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.6
0.76
0.8
76.9
30.6
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
78.1
0.97
1.6
95.32
31.5

Associated Gene:

Gene:
CERS3
Ensembl Gene ID:
ENSAPLG00000006825
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007084
18119826 - 18154113
34288