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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18143966_18144861_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18143966 - 18144861
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
TCCGTCTGAATC
Flanking Amino Acid:
SIAGFIFLYDKPWFYDIWQT
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
79.8
0.67
0.8
72.4
37.7
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
51.5
0.03
1.6
57.85
41.9

Associated Gene:

Gene:
CERS3
Ensembl Gene ID:
ENSAPLG00000006825
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007084
18119826 - 18154113
34288