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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18144920_18148691_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18144920 - 18148691
Intron Length:
3772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TTTAATCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCCTTTTAATC
Flanking Amino Acid:
PTVLRKFQEAFWRFSFYLTS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
71.7
33
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.7
0.76
0.8
77.6
36.3
Minor 5ss
35.4
-1.7
3
46.4
43
Minor BPS
67.3
0.52
1.2
70.66
35.2

Associated Gene:

Gene:
CERS3
Ensembl Gene ID:
ENSAPLG00000006825
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007084
18119826 - 18154113
34288