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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18148811_18150898_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18148811 - 18150898
Intron Length:
2088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTGTTGCTAACA
Flanking Amino Acid:
FRECSKHPSQSEIQGLAKKC
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
85.3
31.4
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
84.6
0.78
0.8
79.8
31.9
Minor 5ss
39.9
-1.1
3.4
58
40.7
Minor BPS
50
-0
2.3
71.32
41.1

Associated Gene:

Gene:
CERS3
Ensembl Gene ID:
ENSAPLG00000006825
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007084
18119826 - 18154113
34288