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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18172787_18175714_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18172787 - 18175714
Intron Length:
2928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATC
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTTTGAAAT
Flanking Amino Acid:
QNSATEAEIKEVFQSSMSQL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
79
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.6
0.67
0.9
70.2
44.6
Minor 5ss
43.6
-0.7
2.9
61
43.6
Minor BPS
61.9
0.45
1.5
78.61
37.2

Associated Gene:

Gene:
LINS1
Ensembl Gene ID:
ENSAPLG00000006710
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041193
18170321 - 18181267
10947
ENSAPLT00000018985
18170321 - 18181267
10947
ENSAPLT00000006965
18170321 - 18180540
10220