Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18176306_18176570_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18176306 - 18176570

Intron Length:

265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGTAG

5'SS Class:

major

3'SS Sequence:

CTTGTTGCTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATTAT

U12 Branch Point Sequence:

CCAACTCTAACA

Flanking Amino Acid:

ILKDETLPKTDILKKLLSPL

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.38

1.2

57.7

43.9

Major BPS

63.3

0.33

1.1

41.2

Major PPT

74.6

0.55

0.9

68.9

37.3

Minor 5ss

40.5

-1.1

3.4

55.1

49.1

Minor BPS

49.4

-0

1.7

57.35

Associated Gene:

Gene:

LINS1

Ensembl Gene ID:

ENSAPLG00000006710

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041193

18170321 - 18181267

10947

ENSAPLT00000018985

18170321 - 18181267

10947

ENSAPLT00000006965

18170321 - 18180540

10220