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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18176713_18177486_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18176713 - 18177486
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTCATT
Flanking Amino Acid:
SLVYFQLKEENALNVTWLSH
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
0.8
72.5
32.2
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
61.3
0.44
1.9
84.41
36.8

Associated Gene:

Gene:
LINS1
Ensembl Gene ID:
ENSAPLG00000006710
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041193
18170321 - 18181267
10947
ENSAPLT00000018985
18170321 - 18181267
10947
ENSAPLT00000006965
18170321 - 18180540
10220