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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18177577_18177689_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18177577 - 18177689
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTACATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTTTTTACAT
Flanking Amino Acid:
LKEPKISSKLICLLSSCDRL
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.7
0.69
0.8
74.4
35.2
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
58.5
0.35
1.7
75.95
41.3

Associated Gene:

Gene:
LINS1
Ensembl Gene ID:
ENSAPLG00000006710
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041193
18170321 - 18181267
10947
ENSAPLT00000018985
18170321 - 18181267
10947
ENSAPLT00000006965
18170321 - 18180540
10220